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Spravilo in predelava laškega smilja
Dunja Bandelj, Alenka Baruca Arbeiter, Matjaž Hladnik, Katja Kramberger, 2025, independent scientific component part or a chapter in a monograph

Keywords: laški smilj, žetev, eterična olja, hidrolat
Published in RUP: 09.01.2026; Views: 50; Downloads: 0
Full text (3,08 MB)

Genetske in genomske raziskave laškega smilja
Petra Gabrovšek, Alenka Baruca Arbeiter, Matjaž Hladnik, Dunja Bandelj, 2025, independent scientific component part or a chapter in a monograph

Keywords: laški smilj, genetske raziskave, genomske raziskave
Published in RUP: 09.01.2026; Views: 50; Downloads: 0
Full text (1,21 MB)

First EST-SSRs of Helichrysum italicum (Roth) G. Don (Asteraceae) revealed insights into the genetic diversity and population structure in Corsica
Petra Gabrovšek, Matjaž Hladnik, Dunja Bandelj, Zala Jenko Pražnikar, Saša Kenig, Félix Tomi, Marc Gibernau, Slavko Brana, Alenka Baruca Arbeiter, 2025, original scientific article

Abstract: Helichrysum italicum (Roth) G. Don (Asteraceae) is a valuable medicinal and aromatic plant native to a variety of habitats across the Mediterranean region. However, genetic studies of this morphologically diverse species have been limited by the scarcity of species-specific DNA markers. To address this limitation, we generated the first de novo transcriptome assembly comprising 24,806 transcripts from young shoots containing leaves and flowers, developed EST-SSR markers, and evaluated their utility in population genetic analysis. Seventy-eight primer pairs were designed, of which 23 showed successful amplification, polymorphism, and transferability to Helichrysum litoreum Guss. and Helichrysum arenarium (L.) Moench. A subset of 12 EST-SSRs was used to genotype 270 individuals from 12 natural populations of H. italicum in Corsica (France), along with one outgroup population from Croatia. The polymorphic information content ranged from 0.250 to 0.796, and Shannon’s information index ranged from 0.588 to 1.843, indicating the markers’ suitability for popu- lation genetic studies. Analysis of molecular variance revealed that 15% of the total genetic variation was attributable to differences among populations. Discriminant analysis of principal components and Bayesian clustering in STRUCTURE identified distinct popu- lation clusters corresponding to geographic locations. Notably, the southernmost coastal populations were clearly differentiated from the others.
Keywords: Helichrysum italicum, immortelle, de novo transcriptome, genic microsatellite markers, EST-SSRs, population study, Corsica, Mediterranean Basin
Published in RUP: 17.12.2025; Views: 168; Downloads: 6
Full text (4,87 MB)
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Genome annotation using MAKER2, EviAnn and BRAKER3 : final project paper
Katarina Javor, 2025, undergraduate thesis

Keywords: genome annotation, MAKER2, BRAKER3, EviAnn, gene prediction, ab initio methods
Published in RUP: 14.09.2025; Views: 343; Downloads: 8
Full text (942,89 KB)

Analiza transkriptoma pri različnih tipih miozitisa : zaključna naloga
Eva Gajšt Kastelec, 2025, undergraduate thesis

Keywords: idiopatske vnetne miopatije, RNA-seq, diferenčna izraženost, interferonska signalizacija, komplementni sistem, bioinformatika, zaključne naloge
Published in RUP: 06.09.2025; Views: 344; Downloads: 6
Full text (4,27 MB)