1. Biodiversity genomics research practices require harmonising to meet stakeholder needs in conservationElena Bužan, Christian de Guttry, Chiara Bortoluzzi, Nathaniel R. Street, Kay Lucek, Anna Rosling, Lino Ometto, Alice Mouton, Luísa S. Marins, María José Ruiz-López, José Melo-Ferreira, Elisabet Ottosson, Camila J. Mazzoni, Robert M. Waterhouse, 2025, izvirni znanstveni članek Opis: Biodiversity resilience relies on genetic diversity, which sustains the evolutionary potential of organisms in dynamic ecosystems. Genomics is a powerful tool for accurately estimating genetic diversity across genomes of species and populations. However, integration of genomic data into conservation efforts faces challenges due to the heterogeneity of approaches employed. Establishing common sets of standards for genomic data production and analysis is essential to consistently interpret results and clearly communicate outcomes to stakeholders. While the European Reference Genome Atlas (ERGA) community has contributed significantly to the standardisation of reference genome methodologies in synergy with other initiatives, there is now an urgent need to extend these principles to downstream analyses. ERGA aims to build on its experience to help establish harmonised approaches in applied biodiversity genomics research, aligned with ongoing efforts to define standardised metrics for measuring and reporting genetic diversity. Establishing consensus on best practices for genome-wide data generation methods and applications will substantially increase accuracy, interpretability, and comparability, together with enhanced stakeholder capacities. By identifying key opportunities and challenges, as well as conducting preliminary stakeholder mapping and examining case studies, the goal is to build an inclusive framework that ensures the relevance and widespread adoption of these best practices: fostering trust and confidence in genomics research practices to meet stakeholder needs in biodiversity conservation. We call upon the broader research community to join efforts in establishing these approaches, recognising the importance of participation of end-users, to foster the integration of genomic data into the toolkit for measuring and reporting genetic diversity.
Ključne besede: best practices, biodiversity genomics, genome-wide genetic diversity, stakeholder engagement, standardisation, whole genome resequencing data
Objavljeno v RUP: 16.01.2026; Ogledov: 131; Prenosov: 2
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3. Analysis of genetic diversity in Croatian fig (Ficus carica L.) germplasm using SSR markersDanijela Poljuha, Ines Kralj, Marin Krapac, Tatjana Klepo, Mira Radunić, Frane Strikić, Tim Weber, Sezai Ercişli, Alenka Baruca Arbeiter, Matjaž Hladnik, Dunja Bandelj, 2021, objavljeni znanstveni prispevek na konferenci Ključne besede: Ficus carica, germplasm, national collections, genetic diversity, Croatia, microsatellite
Objavljeno v RUP: 18.10.2021; Ogledov: 3318; Prenosov: 35
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4. First set of microsatellite markers for immortelle (Helichrysum italicum (Roth) G. Don) : a step towards the selection of the most promising genotypes for cultivationAlenka Baruca Arbeiter, Matjaž Hladnik, Jernej Jakše, Dunja Bandelj, 2021, izvirni znanstveni članek Ključne besede: curry plant, Helichrysum italicum (Roth) G. Don, high-throughput DNA sequencing, genomic SSRs, genetic diversity, DNA fingerprinting
Objavljeno v RUP: 06.05.2021; Ogledov: 4240; Prenosov: 37
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5. Inferring population history and demography using microsatellites and major histocompatibility complex genes in european roe deerElena Bužan, Luka Duniš, Urška Gerič, Sandra Potušek, Boštjan Pokorny, 2021, objavljeni povzetek znanstvenega prispevka na konferenci Ključne besede: microsatellites, major histocompatibility complex, next-generation sequencing, spatial genetic diversity, roe deer
Objavljeno v RUP: 04.02.2021; Ogledov: 3335; Prenosov: 13
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6. The characterisation of Vitis vinifera 'Refošk' with AFLP and SSR molecular markers and ampelographic traitsMatjaž Hladnik, Jernej Jakše, Dunja Bandelj, Irma Tomažič, 2014, izvirni znanstveni članek Ključne besede: AFLP, genetic diversity, SSR, cultivar identity, morphological traits, germplasm, grapevine, Refošk, Refosco
Objavljeno v RUP: 21.12.2015; Ogledov: 5999; Prenosov: 390
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7. Genomic and EST microsatellite loci development and use in Olive : molecular tools for genetic mapping and association studiesL. Essalouh, A. Zine El Aabidine, S. Contreras, I. Ben Sadok, S. Santoni, B. Khadari, Jernej Jakše, Dunja Bandelj, 2014, objavljeni znanstveni prispevek na konferenci Ključne besede: Olea europaea L., molecular markers, genetic map, genetic diversity, association mapping
Objavljeno v RUP: 15.10.2015; Ogledov: 8319; Prenosov: 127
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