Iskanje po repozitoriju

Opis: Biodiversity resilience relies on genetic diversity, which sustains the evolutionary potential of organisms in dynamic ecosystems. Genomics is a powerful tool for accurately estimating genetic diversity across genomes of species and populations. However, integration of genomic data into conservation efforts faces challenges due to the heterogeneity of approaches employed. Establishing common sets of standards for genomic data production and analysis is essential to consistently interpret results and clearly communicate outcomes to stakeholders. While the European Reference Genome Atlas (ERGA) community has contributed significantly to the standardisation of reference genome methodologies in synergy with other initiatives, there is now an urgent need to extend these principles to downstream analyses. ERGA aims to build on its experience to help establish harmonised approaches in applied biodiversity genomics research, aligned with ongoing efforts to define standardised metrics for measuring and reporting genetic diversity. Establishing consensus on best practices for genome-wide data generation methods and applications will substantially increase accuracy, interpretability, and comparability, together with enhanced stakeholder capacities. By identifying key opportunities and challenges, as well as conducting preliminary stakeholder mapping and examining case studies, the goal is to build an inclusive framework that ensures the relevance and widespread adoption of these best practices: fostering trust and confidence in genomics research practices to meet stakeholder needs in biodiversity conservation. We call upon the broader research community to join efforts in establishing these approaches, recognising the importance of participation of end-users, to foster the integration of genomic data into the toolkit for measuring and reporting genetic diversity.
Ključne besede: best practices, biodiversity genomics, genome-wide genetic diversity, stakeholder engagement, standardisation, whole genome resequencing data
Objavljeno v RUP: 16.01.2026; Ogledov: 12; Prenosov: 2
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Opis: The distylous plant Primula veris has long served as a model species for studying heterostyly, that is the occurrence of multiple floral morphs within a population to ensure outcrossing. Habitat loss, reduced plant population sizes, and climate change have raised concerns about the impact of these factors on morph ratios and the related consequences on fitness of heterostylous species. We studied the deviation of floral morphs of P. veris from isoplethy (i.e. equal frequency) in response to plant population size, landscape context and climatic factors, based on a pan-European citizen science campaign involving observations from 28 countries. In addition, we examined the relative frequency of morphs to determine whether landscape and climatic factors disrupt morph frequencies or whether a specific morph has an advantage over the other. Theory predicts equal frequencies of short-styled S-morphs and long-styled L-morphs in populations at equilibrium. However, data from >3000 populations showed a substantial morph deviation from isoplethy and a significant excess of S-morphs (9% higher compared to L-morphs). Deviation of morph frequency from equilibrium was substantially stronger in smaller populations and was not affected by morph identity. Higher summer precipitation and land use intensity were associated with an increased prevalence of S-morphs. Five populations containing individuals exhibiting short homostyle phenotypes (with the style and anthers in low positions) were found. Genotyping of the individuals at CYP734A50 gene of the S locus, which determines the length of the style and the position of anthers of P. veris, revealed no mutations in this region. Our results based on an unprecedented geographic sampling suggest that changes in land use and climate may be responsible for non-equilibrium morph frequencies. This large-scale citizen science initiative sets foundations for future studies to clarify whether the unexpected excess of S-morphs is due to partial intra-morph compatibility, disruption of heterostyly or survival advantage of S-morphs. Synthesis. Human-induced environmental change may affect biodiversity indirectly through altering reproductive traits, which can also lead to reduced fitness and genetic diversity. Further research should consider the possible role of pollinators in mediating the ecological and evolutionary consequences of recent landscape and climatic shifts on plant reproductive traits.
Ključne besede: citizen science, flower, heterostily
Objavljeno v RUP: 16.01.2026; Ogledov: 12; Prenosov: 2
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Opis: Monitoring amphibians in non-breeding habitats is constrained by low detectability and potential disturbance to sensitive ecosystems. We tested the effectiveness of artificial shelters - PVC pipes - as a non-invasive method for monitoring the European tree frog (Hyla arborea) outside the breeding season in Škocjanski zatok Nature Reserve (Koper, Slovenia). Over three years (2022–2024), we installed 40- and 50-mm diameter shelter pipes at 24 sites and conducted regular inspections. A total of 338 encounters of the focal species were recorded, with frogs of all sizes using the shelters. Overall shelter occupancy declined across years, possibly reflecting a combination of factors including reduced recruitment, vegetation changes, demographic fluctuations, and weather conditions. A statistically significant trend was observed, with narrower (40-mm) shelter pipes having 1.6 to 1.7 times more captures than wider (50-mm) ones, despite no significant difference in the body size of frogs occupying each type. By using PVC artificial shelters, we greatly enhanced the detectability of H. arborea in the Škocjanski zatok Nature Reserve compared to classical monitoring methods such as acoustic surveys or dip-netting. Importantly, a non-invasive approach using artificial shelters minimized the risk of disturbance to breeding and migratory birds, which is essential in areas with high avifaunal conservation value. Our results support the broader use of artificial shelters for monitoring arboreal amphibians in ecologically sensitive areas and suggest future research should explore finer-scale shelter design to improve detection and ecological interpretation across life stages.
Ključne besede: Hyla arborea, artificial shelters, PVC pipes, amphibian monitoring, protected areas
Objavljeno v RUP: 14.01.2026; Ogledov: 52; Prenosov: 2
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Opis: A nut graph is a nontrivial graph whose adjacency matrix has a one-dimensional null space spanned by a vector without zero entries. Recently, it was shown that a nut graph has more edge orbits than vertex orbits. It was also shown that for any even $r \geq 2$ and any $k \geq r + 1$, there exist infinitely many nut graphs with r vertex orbits and k edge orbits. Here, we extend this result by finding all the pairs $(r, k)$ for which there exists a nut graph with $r$ vertex orbits and $k$ edge orbits. In particular, we show that for any $k \geq 2$, there are infinitely many Cayley nut graphs with $k$ edge orbits and $k$ arc orbits.
Ključne besede: nut graph, vertex orbit, edge orbit, arc orbit, Cayley graph, automorphism
Objavljeno v RUP: 09.01.2026; Ogledov: 138; Prenosov: 3
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Opis: Background With the worldwide spread of the Asian tiger mosquito, Aedes albopictus, the number of autochtho‑ nous cases of exotic arboviral diseases, such as dengue or chikungunya, is increasing in temperate regions. In Europe, pyrethroids are the only insecticides allowed for the abatement of adult mosquitoes and are thus crucial for limiting ongoing arbovirus transmission. Despite this and the report of resistance rising in vector populations worldwide, information on the pyrethroid resistance status of vector populations and knowledge on resistance mechanisms is widely lacking. Genotyping of knockdown resistance (kdr) mutations situated within the target site of pyrethroids, i.e., the voltage‑gated sodium channel (VGSC), and associated with pyrethroid resistance, is a cost‑effective approach to investigate the spread of resistance in a population. Herein, we describe the European‑wide distribution of two kdr mutations, i.e., I1532T and F1534C, in Ae. albopictus and evaluate their co‑occurrence with another well‑characterized kdr mutation, V1016G. Methods Genotyping of the kdr mutation F1534C was performed by allele‑specific PCR for 1732 Ae. albopictus specimens sampled in 19 European countries; for a subset of 419 specimens mutation I1532T was also genotyped by sequencing. For all samples, information on mutation V1016G was available, allowing evaluation of the co‑occur‑ rence of kdr alleles. Results Mutation 1534C was detected in nine sites from six countries at an overall frequency close to 5%. High‑ est frequencies per site were detected in Cyprus (84%) and Greece (45%). Allele 1532 T was identified in 11 sites from 7 countries at frequencies ranging from 4% to 25% per site. Co‑occurrence of different kdr alleles (1534C, 1532 T and 1016G) was observed in nine sampling sites from seven countries. Conclusions The present study offers the first map of the occurrence of the major Ae. albopictus kdr alleles across Europe and highlights a differential distribution of the two alleles most strongly associated with pyrethroid resistance, 1016G and 1534C. Our findings also point to the need for enhancing resistance monitoring in the East‑ ern Mediterranean region, where the two mutations are shown to exist in geographically close areas, with the risk of emergence of highly resistant double mutants.
Ključne besede: mosquito, Aedes albopictus, insecticide resistance, Kdr, arbovirus vector, vector control, Europe
Objavljeno v RUP: 05.01.2026; Ogledov: 204; Prenosov: 3
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