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Title:Red deer resequencing reveals the importance of sex chromosomes for reconstructing Late Quaternary events
Authors:ID Jong, Menno J. de (Author)
ID Anaya, Gabriel (Author)
ID Niamir, Aidin (Author)
ID Pérez-González, Javier (Author)
ID Broggini, Camilla (Author)
ID Membrillo del Pozo, Alberto (Author)
ID Nebenfuehr, Marcel (Author)
ID Peña, Eva de la (Author)
ID Ruiz-Olmo, Jordi (Author)
ID Seoane, Jose Manuel (Author)
ID Bužan, Elena (Author)
ID Iacolina, Laura (Author)
Files:.pdf RAZ_Jong_Menno_J._de_2025.pdf (8,27 MB)
MD5: 510BA91F1B0626227E7ECDBB9B6A0558
 
URL https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msaf031/8002771
 
Language:English
Work type:Article
Typology:1.01 - Original Scientific Article
Organization:FAMNIT - Faculty of Mathematics, Science and Information Technologies
Abstract:Sex chromosomes differ in their inheritance properties from autosomes, and hence may encode complementary information about past demographic events. We compiled and analysed a range-wide resequencing dataset of the red deer (Cervus elaphus), one of the few Eurasian herbivores of the Late Pleistocene megafauna still found throughout much of its historic range. Our analyses of 144 whole genomes reveal striking discrepancies between the population clusters suggested by autosomal and X-chromosomal data. We postulate that the genetic legacy of Late Glacial population structure is better captured and preserved by the X chromosome than by autosomes, for two reasons. First, X chromosomes have a lower Ne and hence lose genetic variation faster during isolation in glacial refugia, causing increased population differentiation. Second, following postglacial recolonisation and secondary contact, immigrant males pass on their X chromosomes to female offspring only, which effectively halves the migration rate when gene flow is male-mediated. Our study illustrates how a comparison between autosomal and sex chromosomal phylogeographic signals unravels past demographic processes which otherwise would remain hidden.
Keywords:red deer, sex chromosome, genomics
Publication date:05.02.2025
Year of publishing:2025
Number of pages:str. 1-17
Numbering:Vol. 42, iss. 2
PID:20.500.12556/RUP-21538 This link opens in a new window
UDC:599.735.311:575.111
ISSN on article:1537-1719
DOI:10.1093/molbev/msaf031 This link opens in a new window
COBISS.SI-ID:225588227 This link opens in a new window
Publication date in RUP:08.08.2025
Views:406
Downloads:5
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Record is a part of a journal

Title:Molecular biology and evolution
Shortened title:Mol. biol. evol.
Publisher:Society for Molecular Biology and Evolution
ISSN:1537-1719
COBISS.SI-ID:19648039 This link opens in a new window

Document is financed by a project

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P1-0386-2018
Name:Varstvena biologija od molekul do ekosistema

Licences

License:CC BY-NC 4.0, Creative Commons Attribution-NonCommercial 4.0 International
Link:http://creativecommons.org/licenses/by-nc/4.0/
Description:A creative commons license that bans commercial use, but the users don’t have to license their derivative works on the same terms.

Secondary language

Language:Slovenian
Keywords:navadni jelen, spolni kromosom, genomika


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